Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFVDQVKIYVKAGNGGDGMVAFRREKFVPNGGPAGGDGGKGADVVFVVDEGLRTLVDFRFKRIFKAEHGEHGMSKSMHGRGAEDLVVKVPQGTIVKDIDTGEIIADLVAHGQRAVIAKAGRGGRGNKRFATPANPAPELSENGEPGQERNVQLELKVLADVGLVGFPSVGKSTLLSVVSAARPKIAAYHFTTIVPNLGMVDAGDGRSFVMADLPGLIEGASQGVGLGHQFLRHIERTRVIVHVIDMSGSEGRVPYEDYMAINNELEQYNLRLMERPQIIVANKMDMPDAEENLNEFKTKIA-EDIPVFPISAVTKTGLRELLLAIADKLETTPEFPLNEILEQEDEDTVLYKYVAEEPDFEISREPDGTFVLSGAKIERLFTMTNFERDASISRFARQLRAMGVDEALRKRGAKDGDIVRLLDYEFEFMD |
1UDX Chain:A ((1-413)) | MFQDVLVITVAAGRGGDGAVSFRREKFVPKGGPDGGDGGRGGSVYLRARGSVDSLSRLS-KRTYKAEDGEHGRGSQQHGRGGEDLVIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSPTRQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE----PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE-EEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPPPEMPKPVP--------------QAGVEVVPVAEGVYEVRAPEVERYLARIKGDLMEAAGYLQEVFRRQGVEAALRAKGVRAGDLVRIGGLEFEYI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UDX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151703 for 3341 contacts (-45.4/contact) +
2D Compatibility (PS) -43257 + (NN) -11618 + (LL) 1708
1D Compatibility (HY) -29200 + (ID) 8800
Total energy: -242870.0 ( -72.69 by residue)
QMean score : 0.500
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