Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VENTIVIKLGGVASDNLTEGFFRQITEWQAANKKIVLVHGGGHYITKMMEALAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNASDTGLLEADRLSDTDLGLVGKITKVKTNLIEQLLSENIITVIAPLGINSEHDWLNVNADTAACEVASALHAEALYLLTDVPGVKNGSEIIGEIATAEIEKLQSTGVIKGGMIPKLASAAFAAENGVGQVIITDSLNNSGTKIKNKVAIG
3L86 Chain:A ((35-270))
MKDIIVIKIGGVASQQLSGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKINGLRVTSKDDMVLVSHALLDLVGKNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLENGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLIGDNL--------------
General information:
TITO was launched using:
RESULT:
Template:
3L86.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175294 for 1946 contacts (-90.1/contact) +
2D Compatibility (PS) -25894 + (NN) -7144 + (LL) 376
1D Compatibility (HY) -26000 + (ID) 4650
Total energy: -238606.0 ( -122.61 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3L86.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L86-query.scw
PDB file :
Tito_Scwrl_3L86.pdb
: