Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIYFDNSATTKPNAAVLETYTKVAS--NYFANPSSL-HRFGAKSKELLDASRKQIAAMMSALPEEIIFTSGGTEGNNLAIKGLVYSYQNRGKHIITSSIEHPSVRVVMEELEQEGFTVKYLPVDKNGVIKLEELKAALTDETILVSIMGVNNEVGSIQPLQEIGEMLSVLENTFFHVDFVQAIGKIPLTLDANSIDLLTFSGHKFHALRGTGILFKRK--NVHLHPEILGGGQEMGYRSGTENLAGNVALAKALRLTLENEPRK-EALIEIRDYLLTKIAQMSDMTVHTKQSVAAPHIVCFSAKGHRGEILVHALEKEDIYISTTSACSSKQKLASSTLKAMGVTDEEATGAVRVSLSYENRLSEAKIFIQKLQEIIENLNKVVK |
| 3LVJ Chain:A ((24-376)) | -IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRA-RGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMAL--KDLAVSSG------SLEPSYVLRALGLNDELAHSSIRFSL---------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LVJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165613 for 3012 contacts (-55.0/contact) +
2D Compatibility (PS) -37549 + (NN) -16851 + (LL) 3544
1D Compatibility (HY) -24800 + (ID) 7200
Total energy: -248469.0 ( -82.49 by residue)
QMean score : 0.546
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