Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLRGILPFAHDTLRKVVRSGDYVVDATCGNGHDTLLLAELVGINGHVLGFDIQQLAIDATNTRLENAGVSSQVELVCASHARI----PEYTSKPVRAAIFNLGYLPGGDKEITTTADSTLESIGHLMELLEVGGVIILVIYHGHPAGKQEKDAVMTFCEAIPQQDFHVLSYNFINQKNDAPFVIIIEKRKPRQS
4POO Chain:A ((12-195))
-----ILPYSKELLKMAAGEGDIVIDATMGNGHDTQFLAELVGENGHVYAFDIQESAVANTKERLGEA-YQARTTLFHKSHDKIAKSLPPETHGKVAAAVFNLGYLPGGD--ITTNGSSTIKAIEQLLSIMKDEGLIVLVVYH---EGKAEKNDVLDFCRNLDQQAARVLTYGFINQQNDPPFIVAIEKK-----
General information:
TITO was launched using:
RESULT:
Template:
4POO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163658 for 1413 contacts (-115.8/contact) +
2D Compatibility (PS) -19210 + (NN) -7924 + (LL) 76
1D Compatibility (HY) -18000 + (ID) 4500
Total energy: -213216.0 ( -150.90 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_4POO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4POO-query.scw
PDB file :
Tito_Scwrl_4POO.pdb
: