Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLIPLSLIIFLGFLAVLCLFDFVFRLYWFKYFLATMGLIASGVVFFISFYGGGMSQTEIAIAIFIGSFGEYVVSLIISLVRFISRKSKKPKQKKKAKTA
3ZKV Chain:A ((398-434))
----------------------------------------------------------------------EYIKPLYAHLTRILVRKSEQPDEKSLAK--
General information:
TITO was launched using:
RESULT:
Template:
3ZKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1627 for 102 contacts (-16.0/contact) +
2D Compatibility (PS) -2731 + (NN) 901 + (LL) 6708
1D Compatibility (HY) -1600 + (ID) 600
Total energy: 1051.0 ( 10.30 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_3ZKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZKV-query.scw
PDB file :
Tito_Scwrl_3ZKV.pdb
: