Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSKFFIGMMTFLLSLICLTGMKAEAKSVGDISPDDISPEISDNRFQSAEGKVLPNFEVDMSISDQNNGKLSIDEDFELTSDGDIILIGTVQGQYIQGTPILNENGQLNKIPNRDQGIIMRVDRTTKKVEWARVVNYEDGNYNSQYAADKWFSSYKSITTNSSKSTFYVGGEVVNYYGDSGGGSTLIVKSIDANGNFQIAHKSYVSYGVPSRSDLTYAYFMDIQMEGNTLTMSASARYAAQGKQFIRYTLEPASLSITKNEFNPLDNTFWAKYQRTDVLKVDNKGLMAYNADVNGANQLKMSIRESENNYKEITLFDSVPEILANSSPYIFMEDRGDGNVFVVMSTPTTWYIALVNIASEQVVETKKMTMNSSTTLNSVIYSEGKGLLLGGSTHAEESIFGSEPLNKNNGYYLALGNDLNVTDSQILRTNQHNSLTTIINGVGNKVDGFFSYDGLNNDGYIQNVEYPNTYDVNPNGAMIFAEFNLQPAPVLDTGNPILAFYQGERRADFDELEGVKAYSGIDSSDVTKSITKNTFDLYTVGVQQQLYQIEYLPGSGNKTTGTRNVQLIHPLETPKLEKSYADSHGAFKVGEVVPANAIHAFNGLDSANNVTYVVTAVDDEKITVDASIKRTEGTKTAVINKEITLMTSTADETAVIDVTSVALAAGKYTSLTDVRNEGHFHIYAETMDSVSIDPKYVKLTEDPENPVDWNAPGVYYVTASLDPASGYTAKDVKVSVAVVDVGSPKVISVNMKPYNPTTALVVAEDDINGAGVYKINWAIKDANGLIIQQGVEESGATIRVQTPVPIDLSTLNDGNYTLSVSAADRIGHTSEASEKAFTVDRQAPVVTADDKITYEINTKKTEEEFLNDVNVKTEAGAVIKTNFDTMVRMDSPGDYTVLVEATDAAGNQSDPIYVIVTVEDTVAPIISADEAISYNQGNIRTEALFLTDIHATTDEPATITSDFADQVKFDTPGVYAVTLKANDISGNQAIPRTVNVTIKDVTAPVITADEAIIYEKGITKSATDFLTDIHATTNDGSAITSNFATVVDLNTPGDYDVTLSSTDTGGNISDPVTITVTVRDTTPPVITADTTITYEKGTTKTAAAFLTDVNATTNDGSAVTSNFNPISLKQVGTYQVTLSSVDENGNYALPVKVTVVVQDTQKPVISSSATSITYERGEKKQETGFFLDLAIKTDDGTPVTSDFDTAVNLDTAGTYTVTLNSEDESGNKADPVTITVTVADTEKPIITADTTITYAKGTTKTVAQFLTDIHATTNDGSTIISNFDPTVLAQEGTYTVVLNAKDESNNEADPVTVTITVVDTKGPIINALNAITYERTINKNEADFLADIEATTDDGSTITTDFNSKDLDTVGTYIVTLNAEDASGNKATPVKVTIKVEDTIPPIITADQSITYERGITKTEQAFYTDIKAATSDNSPISSDFSKIDLTKTGNYEVLLRATDQSGNKALPLKINVLVQDTIAPVIKTTSREITAERGTPMTEQQLLAKIGANTDDGSKITTDYNPAIVNTSGDYLVHLYAVDAAGNQA--IPVEITIHV----------KDTTAPIIKADKKISYPVGTVKTVTEFLQ-DIHATTDDGSKITTD---FDPNMLKTPGKYTIHLNAVDADGNKAKTIDVSLTVEEKVTPPKPPTPDDGGNNTNGSNGTNGSNTDITVNPTKQNTTATNESIPALGDTKSTIPVIVGMFLLATSLVLIRRK |
| 2YN3 Chain:A ((64-195)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITSVDAIGNRSDDVPLDIMKEVPVISLSPDSDSGTVGDNITRDKQPTFIIGNLESDVVVVQVDINGTVYNAEKNADGVWFFTPGTPLADGSYTISVIASDAAGNQKNSLPITVTIDSTLTVPE--------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YN3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 2954 for 565 contacts (5.2/contact) +
2D Compatibility (PS) -11016 + (NN) 3664 + (LL) 86688
1D Compatibility (HY) -5200 + (ID) 1600
Total energy: 75490.0 ( 133.61 by residue)
QMean score : 0.222
|
|
|