Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVSNATLKEAVDVLKKTGVRITPQRHAILEFLINSHTHPTADDIYRALEGNFPNMSVATVYNNLRVFRDAGLIKELSYGDASSRFDFSTSNHYHAICNVCGKIVDFHYPGLDEVEHFAAHMTGYEIDNHRLEVYGICPACKEKQSNN
3F8N Chain:A ((6-140))
-------LKEALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFVTSDHYHAICENCGKIVDFHYPGLDEVEQLAAHVTGFKVSHHRLEIYGVCQECS------
General information:
TITO was launched using:
RESULT:
Template:
3F8N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84578 for 837 contacts (-101.0/contact) +
2D Compatibility (PS) -14835 + (NN) -8486 + (LL) 732
1D Compatibility (HY) -18000 + (ID) 5200
Total energy: -130367.0 ( -155.76 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_3F8N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F8N-query.scw
PDB file :
Tito_Scwrl_3F8N.pdb
: