Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEGVENKVIVLAGMIGAGKSSYTELIANELGTKAFYESIKDNRILEMFYDDPKRWAFALQIYFLNTRFRSIKAALTDQNNVLDRSIYEDALFTQINFEEGNISEPEMDTYLDLLDNMMEELAYMPKKAPDLLIYLRGSLDTVLSRIALRGRPYEQIDDNPGLLEYYKHLHSRYDSWFASYDKSETLVINIDEIDINKPNDADYVMQLIHEKLKR
2JAT Chain:A ((3-169))
--------IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQ---LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVL-------LSFDIVIYLRVSTKTAISRIKKRGRSEELLIGE----EYWETLNKNYEEFY-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JAT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65991 for 1124 contacts (-58.7/contact) +
2D Compatibility (PS) -16092 + (NN) -2112 + (LL) 4352
1D Compatibility (HY) -15200 + (ID) 2700
Total energy: -97743.0 ( -86.96 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_2JAT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAT-query.scw
PDB file :
Tito_Scwrl_2JAT.pdb
: