Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSNISKETVEKVANLAKLEVSETEATAFAGQLGKIIELVEQLNTLDTTNVEPTSHAIDVSNVLREDVATKGLDRKEVLKNAPDEQDGMFKVPTIMEQ
2DQN Chain:C ((3-95))
--KVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKNAKETEDGQFKVPTIM--
General information:
TITO was launched using:
RESULT:
Template:
2DQN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9656 for 382 contacts (-25.3/contact) +
2D Compatibility (PS) -9855 + (NN) -3671 + (LL) 372
1D Compatibility (HY) -6400 + (ID) 2200
Total energy: -31410.0 ( -82.23 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_2DQN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DQN-query.scw
PDB file :
Tito_Scwrl_2DQN.pdb
: