Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHLFKLDPAKNLPTNDVTKLIHSGTDGFIIGGTDNVQIEAVQNLYELLVETDLPIFLEISNESMILPEADHFLIPVVLNTENSKWTHGLHKELIKEMGEFIPWKRVTSEGYVILNKDAKVAHLTEAKTDLTDEDIVAYARLAENIFHLPIFYVEYSGMYGDPEVVRKASAALSNTKFWYGGGIRSKEQAAEMAKYADTIIVGNIIYEDLEKALETATIFRKKTV
1VIZ Chain:A ((10-228))
-KHVFKLDPNKDLPDEQLEILCESGTDAVIIGG----TEDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSE-LLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTVAAVK----
General information:
TITO was launched using:
RESULT:
Template:
1VIZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157922 for 1830 contacts (-86.3/contact) +
2D Compatibility (PS) -23228 + (NN) -7899 + (LL) 588
1D Compatibility (HY) -22400 + (ID) 4900
Total energy: -215761.0 ( -117.90 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_1VIZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIZ-query.scw
PDB file :
Tito_Scwrl_1VIZ.pdb
: