Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEKQVAEQLLEIKAVFLKPNEPFTWASGIKSPIYCDNRLTLGFPKVRQFIAKSLAEKIKQTFGEIDVVAGTATAGIPHAAWVSDLLDLPMVYVRSKAKEHGKGNQIEGPISKGQKVVVIEDLISTGGSSLKAVEALEEAGAEVVGIAAIFTYGLAKGKQLLEESGTKLVTLTNYDELIEVALNENYVTGEDMETLKEWKKNP--EKWGK
4RV4 Chain:A ((24-231))
-AMKKEIASHLLEIGAVFLQPNDPFTWSSGMKSPIYCDNRLTLSYPKVRQTIAAGLEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYVR----------QIEGKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKLEAANVASYSLSDYSALTEVAAEKGIIGQAETKKLQEWRKNPADEAW--
General information:
TITO was launched using:
RESULT:
Template:
4RV4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144245 for 1628 contacts (-88.6/contact) +
2D Compatibility (PS) -21817 + (NN) -9424 + (LL) 132
1D Compatibility (HY) -21600 + (ID) 5950
Total energy: -202904.0 ( -124.63 by residue)
QMean score : 0.714
(partial model without unconserved sides chains):
PDB file :
Tito_4RV4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RV4-query.scw
PDB file :
Tito_Scwrl_4RV4.pdb
: