Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKP-IIALDFQTYEEVETFLAKFSGETLSVKVGMELFYSNGPVIVEKIKQQNHEIFLDLKLHDIPNTVKSAMIGLAKLGVDMVNVHAAGGKKMMEAAKEGLEIGSPSGK-RPKIIAVTQLTSTSETDMQTEQLIKTSLLESVMHYSNLSKQAGLDGVVCSALEAEDIKQQNGADFLRVTPGIRLASDTADDQIRVVTPEKARLIGSSNIVVGRSITRANDPVAAYNQVLKEWNA
2YYU Chain:A ((5-236))
--TPFIVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGASFLAVTPGIRFAD-------RVVTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWN-
General information:
TITO was launched using:
RESULT:
Template:
2YYU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95262 for 1852 contacts (-51.4/contact) +
2D Compatibility (PS) -24707 + (NN) -11134 + (LL) 564
1D Compatibility (HY) -23200 + (ID) 6950
Total energy: -160689.0 ( -86.77 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_2YYU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YYU-query.scw
PDB file :
Tito_Scwrl_2YYU.pdb
: