Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VLQTEMKVIQQTEIADKVYELILTGECVAGMS-PGQFLMLKPSRSDLLMRRPISICSYDKTAKTCILLYRV--EGDGTRDFSKLSEGDTIDVLGPLGKGFDIDTTPAPKTALLIGGGIGVPPMYQLGKELAEKGVQVMFVNGFQSAKDSFYAQEMAEYG--TVHIATVDGSLGTQGFVTDITKNFPEEPDVIYSCGPKAMLQAVKASFPE-TKTYLSLEERMACGIGACYACVCPKADDTNKQFKVCEDGPVFRADEVKL
1EP2 Chain:B ((3-261))
-LQEMMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKLSKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTGCQMTILLGFASENVKILENEFSNLKNVTLKIATDDGSYGTKGHVGMLMNEIDFEVDALYTCGAPAMLKAVAKKYDQLERLYISMESRMACGIGACYACVEHDKEDESHALKVCEDGPVFLGKQLSL
General information:
TITO was launched using:
RESULT:
Template:
1EP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148850 for 2083 contacts (-71.5/contact) +
2D Compatibility (PS) -27572 + (NN) -11442 + (LL) 192
1D Compatibility (HY) -30000 + (ID) 5900
Total energy: -223572.0 ( -107.33 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1EP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EP2-query.scw
PDB file :
Tito_Scwrl_1EP2.pdb
: