Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGRKTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLALAETGEPIYIVGGAEIYRLFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
2QK8 Chain:A ((2-160))
IVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFGGAQIYDLFLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHVYEK-
General information:
TITO was launched using:
RESULT:
Template:
2QK8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94175 for 1184 contacts (-79.5/contact) +
2D Compatibility (PS) -16874 + (NN) -3022 + (LL) -80
1D Compatibility (HY) -18800 + (ID) 3750
Total energy: -136701.0 ( -115.46 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_2QK8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QK8-query.scw
PDB file :
Tito_Scwrl_2QK8.pdb
: