Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTFQLVATAASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSAIARANLWLRVADRVKIVVGVFKATTFDELFEKTKALPWEDYLPLDAQFPVA-GKSVKSTLYSVPDCQAIVKKAIVNRVSEKYRR--SGRLMETGALFKLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQIWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYELFEEVYGKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED |
| 3LDG Chain:A ((3-380)) | -KTFNLVATAAAGIEAVVGKELRNLGLDCQVENGRVLFKGNIETIAKSNLWLRSADRIKIVVGEFPARTFEELFQGVYALDWENYLPLGCQFPVAKAKSVKSKLHNEPSIQGITKKAIVKKLQHYFHRPDSVPLPENGPEFKIEISLLKDQARVMIDTTGPSLFKRGYRTE---APIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDTDFEQKFGRKADKKRKLYNGSLKVDLYQFYGQRVK------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LDG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201883 for 3120 contacts (-64.7/contact) +
2D Compatibility (PS) -40211 + (NN) -14580 + (LL) 244
1D Compatibility (HY) -35600 + (ID) 10300
Total energy: -302330.0 ( -96.90 by residue)
QMean score : 0.562
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