Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPFLKNKTVLITGASNGLGAEIARQVAMSGGNVIITARSTKKLIELQKDIHDKFSVEATYFTLDMTDFEQVKQVSAEINASY-QIDVLVNCAGFGL-FENAIDIPFETIEKMFDTNVLGLIQLTQLILPQMQARKAGHIINIASQAAKIATPKSTVYSATKYAVLGFSNALRLELMPDKINVTTINPGPI-ATNFFDVADKSSNYLETVGKLVLKPEKVAHKTVQIMGTKRREINLPFVMNIATRLYQVMPQVIEFFGKGAFLKK
3ASU Chain:A ((3-240))
---------VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIA----QLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGG----------------V---ALTPEDVSEAVWWVS-------TLPAHVNINT--LEMMPVTQSY---------
General information:
TITO was launched using:
RESULT:
Template:
3ASU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132341 for 1754 contacts (-75.5/contact) +
2D Compatibility (PS) -22237 + (NN) -2444 + (LL) 2816
1D Compatibility (HY) -16800 + (ID) 4050
Total energy: -175056.0 ( -99.80 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3ASU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ASU-query.scw
PDB file :
Tito_Scwrl_3ASU.pdb
: