Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMEETTKIPQATAKRLPLYHRYLKYLDESGKERVSSAELSEAVKVDSATIRRDFSYFGALGKKGYGYNVSYILDFFSKTLSQDKQTNVALIGVGNLGTALLHYNFMKNNNIKIVAAFDVDPAKVGSVQQDIPIYHLNDMEEIVRENGVEVVILTVPADEAQVTVDRLIEADVKGILNFTPARISVPKQVRVHHIDLTTELQTLIYFLENYPAKTE
2VT3 Chain:A ((11-209))
----------ATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALG-----YNVDYLLSFFRKTLDQD---DVILIGVGNLGTAFLHY------NTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDE--SVAILTVPAVAAQSITDRLVALGIKGILNFTPARLNVPEHIRIHHIDLAVELQSLVYFLKHYS----
General information:
TITO was launched using:
RESULT:
Template:
2VT3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136147 for 1279 contacts (-106.4/contact) +
2D Compatibility (PS) -19814 + (NN) -5730 + (LL) 1636
1D Compatibility (HY) -22400 + (ID) 6100
Total energy: -188555.0 ( -147.42 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_2VT3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VT3-query.scw
PDB file :
Tito_Scwrl_2VT3.pdb
: