Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDVLTLLRNHRSFRKYKKGVEIPEEKLDAIIRAAQAAPSWINGQHYSIIAIKDQERKNKMAELCGNQPYIAECSVFLCFVADFHRVKVASDMHGKSF-QIAGEEDLLMVAATDIGLCMQNALTAAESLDYGTICIGGLRRNITATAGFLNLPEFVMPVVGLCIGVPDVEAPVKPRLPKEAVYFEETYQT---DVMPLLEAYDQEIIPF------SEREGFVSYTERLAKFYDRPYYPNLTEQIKERGFLGGK
3N2S Chain:A ((2-246))
-NNTIETILNHRSIRSFTDQL-LTAEEIDTLVKSAQAASTSSYVQAYSIIGVSDPEKKRELSVLAGNQPYVEKNGHFFVFCADLYRHQQLAEEKGEHISELLENTEMFMVSLIDAALAAQNMSIAAESMGLGICYIGGIRNELDKVTEVLQTPDHVLPLFGLAVGHPANLSGKKPRLPKQAVYHENTYNVNTDDFRHTMNTYDKTISDYYRERTNGKREE--TWSDQILNFMKQKPRTYLNDYVKEKGF----
General information:
TITO was launched using:
RESULT:
Template:
3N2S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157642 for 1708 contacts (-92.3/contact) +
2D Compatibility (PS) -25975 + (NN) -13784 + (LL) 532
1D Compatibility (HY) -14000 + (ID) 3950
Total energy: -214819.0 ( -125.77 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_3N2S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N2S-query.scw
PDB file :
Tito_Scwrl_3N2S.pdb
: