Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEAVKTLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELSNYLASHMAGGDDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI
1VDH Chain:A ((5-249))
VPEPTHTLEGWHVLHDFRLLDFARWFSAPLEAREDAWEELKGLVREWRELEEAGQGSYGIYQVVGHKADLLFLNLRPGLDPLLEAEARLSRSAFARYLGRSYSFYSVVELGS--QEKPLDPESPY----VKPRLTPRVPKSGYVCFYPMNKRRQGQDNWYMLPAKERASLMKAHGETGRKYQGEVMQVISGAQGLDDWEWGVDLFSEDPVQFKKIVYEMRFDEVSARYGEFGPFFVGKYLDEEALRAFLGL
General information:
TITO was launched using:
RESULT:
Template:
1VDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123701 for 1873 contacts (-66.0/contact) +
2D Compatibility (PS) -26595 + (NN) -11298 + (LL) 200
1D Compatibility (HY) -24000 + (ID) 5650
Total energy: -191044.0 ( -102.00 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_1VDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VDH-query.scw
PDB file :
Tito_Scwrl_1VDH.pdb
: