Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNWTIWDKSQKVPYTLLLEADPSEKQIAKYLDKSHVFQLMHDDIVIGIICLFPLNNDQLEIMNIAVSSDYRNQGIGKKLLEKAFDYAIHKHFIKIIVKTGNSSIDQLAFYQKNGFRMQHIIPNYFTENYPNQTITENGIVCLDQIILLKEIKS
1YVK Chain:A ((19-151))
-------------YDLLLLADPSKDIVDEYLERGECYTAWAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQAIDHDFFLRHY-DEDIFENGIQCRDMVRL------
General information:
TITO was launched using:
RESULT:
Template:
1YVK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87845 for 946 contacts (-92.9/contact) +
2D Compatibility (PS) -14520 + (NN) -7234 + (LL) 1336
1D Compatibility (HY) -12000 + (ID) 2600
Total energy: -122863.0 ( -129.88 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1YVK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YVK-query.scw
PDB file :
Tito_Scwrl_1YVK.pdb
: