Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFTKKRGLMLLAAVLLTVCAIWEYAMPTDAAVKSYYVKVEDAGKPVQK-----NQFKGFKYVSNVYDDKGKQKQLTFYSEKELTKNEQFKVLVGENKMVVNYKKIK--NVPDKIKYLAEK
2K5Q Chain:A ((10-91))
---------------------------------EYYVQITVDGKEVHSKADNGQKYKDYEYKLTGFDKDGKEKELEFTAQKNLRKEAFLRVYHSDKKGVSAWEEVKKDELPAKVK-----
General information:
TITO was launched using:
RESULT:
Template:
2K5Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18735 for 423 contacts (-44.3/contact) +
2D Compatibility (PS) -8013 + (NN) -314 + (LL) 4328
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -29534.0 ( -69.82 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_2K5Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K5Q-query.scw
PDB file :
Tito_Scwrl_2K5Q.pdb
: