Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKLNGKVAVVTGAASGMGQQIAILFAKEGAKVVVADLNLEAAQKTVELVEKEHGTGLAVVANVTKQEDIENMINQAIEAFGTLDILVNNAGIMDNFVPAGELTDELWDKVFAINTTGVMRATREALHIFEEKGQGVIVNIASAGGLFGSRAGAAYTASKHAVVGFTKNVGFQYANKNIRCNAIAPGAVNTNIGTTIYAPDEFGQERAMIGMGINPRAGDASEIAKVALFLASDDSSFVNGTVITADAGWTAY
4URE Chain:A ((3-247))
---LEGKTALVTGAGNGIGRTIALTYAAEGANVVVSDISDEWGRETLALIEGKGGKAVFQHADTAHPEDHDELIAAAKRAFGRLDIACNNAGISGEFTPTAETTDAQWQRVIGINLSGVFYGVRAQIRAMLETGGGAIVNISSIAGQIGIEGITPYTAAKHGVVGLTKTVAWEYGSKGIRINSVGPAFINTTLVQNV--PLE--TRRQLEQMHALRRLGETEEVANLVAWLSSDKASFVTGSYYAVDGGYLA-
General information:
TITO was launched using:
RESULT:
Template:
4URE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143629 for 2179 contacts (-65.9/contact) +
2D Compatibility (PS) -27016 + (NN) -10200 + (LL) 388
1D Compatibility (HY) -16000 + (ID) 5000
Total energy: -201457.0 ( -92.45 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_4URE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4URE-query.scw
PDB file :
Tito_Scwrl_4URE.pdb
: