Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLVFAAFIVLFSFSFLSTGLTAQAALKDGTYSVDYTVIQGDSDSASMANDYFDKPATVTVNGGKSTVSLQVNHSKWITGLWVEGNA----VSVTSKNASSDTRKVSFPVSTLSNPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNTTTPATKSDSSNKVTNPKSSDSSQMFLYGIIFVATGAGLILLKRRAIFK
4H8P Chain:A ((12-125))
-----------------------------KDGQYDIAFKVLKDKTEEISMMNQYVVSPARLTVKDGKKYIAMTLKNSEWITKFQTEKNGGFADAKVVSEDKAANTRVVEFEANDLFAKLNAKVKVDI--DSMNYHHFYDVQIQFD------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4H8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53562 for 738 contacts (-72.6/contact) +
2D Compatibility (PS) -12239 + (NN) -4948 + (LL) 6528
1D Compatibility (HY) -10400 + (ID) 2150
Total energy: -76771.0 ( -104.03 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_4H8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H8P-query.scw
PDB file :
Tito_Scwrl_4H8P.pdb
: