Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKEAGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPSGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGISDDEIMDLEIPTGVPLVYELNADLKPVNKYYLDK
4EMB Chain:A ((29-254))
-KLVLVRHGESEWNKENLFTGWTDVKLSDKGIDEAVEAGLLLKQEGYSFDIAFSSLLSRANDTLNIILRELGQSYISVKKTWRLNERHYGALQGLNKSETAAKYGEDKVLIWRRSYDVPPMSLDESDDRHPIKDPRYKHIPKRELPSTECLKDTVARVIPYWTDEIAKEVLEGKKVIVAAHGNSLRALVKYFDNLSEEDVLKLNIPTGIPLVYELDKDLNPIKHYYL--
General information:
TITO was launched using:
RESULT:
Template:
4EMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83643 for 1844 contacts (-45.4/contact) +
2D Compatibility (PS) -24422 + (NN) -6781 + (LL) 196
1D Compatibility (HY) -24400 + (ID) 6600
Total energy: -145650.0 ( -78.99 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_4EMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EMB-query.scw
PDB file :
Tito_Scwrl_4EMB.pdb
: