Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEKQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELEICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHDDIVN
1RFZ Chain:A ((12-162))
-------LEQTARRWLEERGVTVEKIAELVYYLQSKYHPDLTMEECIENVNRVISKREVQNAILTGIQLDKLAEDGRLDEPLQSIIRRDEGLYGVDEILALSIVNVYGSIGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRLAH--------
General information:
TITO was launched using:
RESULT:
Template:
1RFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123646 for 1282 contacts (-96.4/contact) +
2D Compatibility (PS) -16263 + (NN) -5860 + (LL) 1076
1D Compatibility (HY) -18800 + (ID) 5400
Total energy: -168893.0 ( -131.74 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1RFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RFZ-query.scw
PDB file :
Tito_Scwrl_1RFZ.pdb
: