Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHLTDMGIQAVSDDVFTTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPAFVVVGLDREVDYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPGNGSITSVVSVATETAPIFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINYGMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWEFN
4IG4 Chain:A ((13-266))
MRKYNGYLIDLDGTMYRGTERIDAASGFIKELNRLHIPYLFVTNNSTRTPEQVADKLVSLDIPATPEQIFTSSMATANYVYDLDQSAMIYFIGEEGLYKALKEKGFSFADENADVVIVGLDREVTYEKLAVACLAVRNGAKLISTNGDLALPTERGFMPGNGAFTALISHSTQVKATFVGKPEPIIMEQALKVLGTNKNETIMVGDNYDTDILAGIRAGLDTLLVHTGVTTVEKLKEYKQQPTYSMKSLDDWKF-
General information:
TITO was launched using:
RESULT:
Template:
4IG4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135861 for 2166 contacts (-62.7/contact) +
2D Compatibility (PS) -28313 + (NN) -14436 + (LL) -80
1D Compatibility (HY) -26000 + (ID) 6850
Total energy: -211540.0 ( -97.66 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_4IG4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IG4-query.scw
PDB file :
Tito_Scwrl_4IG4.pdb
: