Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSALELKNVSFSRKRDFEMKNVSASIPEGKITTLIGPNGSGKSTMLRLMMRLLTPDSGEILLNEKNITEIPSKDLAK---KMTMLSQAPEG-LVDVMVHDLVAYG----RLPHRSWLSTLQEEDEAVIHWAIKVCNLEELAYRPLHSLSGGERQRAWLAMALAQKTPILLLDEPTTYLDIAHQLELLDLLVHLNKEYNLTIVLVLHDLNQAAIYSDHVFVCENGQLVKDGSPREVFT-TELLRDV-------FHITADITEKDGKQHIHPLASTRFEY
3GFO Chain:A ((24-254))
-------------------LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI-DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLP--------EDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEI--------------------
General information:
TITO was launched using:
RESULT:
Template:
3GFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161324 for 1599 contacts (-100.9/contact) +
2D Compatibility (PS) -23557 + (NN) -15015 + (LL) 3504
1D Compatibility (HY) -18000 + (ID) 3750
Total energy: -218142.0 ( -136.42 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_3GFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFO-query.scw
PDB file :
Tito_Scwrl_3GFO.pdb
: