Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQIISALIFPCLLVILFARITYNRYVGLLLMVILIAASAKLGYTSSMWLIIIDAFSMTIGFVLATYMLRRLKKSGSDF
3L1L Chain:A ((364-376))
------PYLYTCAALLLLG------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3L1L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6785 for 45 contacts (-150.8/contact) +
2D Compatibility (PS) -1223 + (NN) 439 + (LL) 6404
1D Compatibility (HY) -2400 + (ID) 100
Total energy: -3665.0 ( -81.44 by residue)
QMean score : -0.273
(partial model without unconserved sides chains):
PDB file :
Tito_3L1L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L1L-query.scw
PDB file :
Tito_Scwrl_3L1L.pdb
: