Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGIHQYFQSLSDLENIYRCPGKFKYQEHSVAEHSYKVTSIAQFFGAVEEEA-GNEVNWRALYEKALNHDYSELFIGDIKTPVKYATTELREMLSEVEESMTKNFIEREIPETYQPIYRHLLKEGKDSTLEGKILAISDKVDLLYESFGEIQKGNPENIFVEIYSEALATIYEYREMASVKYFLKEILPDMLAEKGIEKTELPQLTTEITTKALRDA
2PAR Chain:A ((7-186))
----HFFAHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASAVLTGDLPT-----------EYKAIEKIAQQKLVDM-VPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYLKCLEELAAGNNEFLLAKTRLEA---TLEARRSQEMDYFMEIFVP----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2PAR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23780 for 1274 contacts (-18.7/contact) +
2D Compatibility (PS) -17685 + (NN) -7710 + (LL) 4076
1D Compatibility (HY) -10800 + (ID) 2200
Total energy: -58099.0 ( -45.60 by residue)
QMean score : 0.340
(partial model without unconserved sides chains):
PDB file :
Tito_2PAR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PAR-query.scw
PDB file :
Tito_Scwrl_2PAR.pdb
: