Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLKYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNL--KVYSDKNAKVEVTIPLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRDKGAERDYFAYSDVNGSTPPEENEGDFDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKYGLIETN |
2YWQ Chain:A ((4-95)) | ---YKLIGRNLEITDAIRDYVEKKLARLDRYQDGELMAKVVLSLAG------KARAEIQVDLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFR---------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YWQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 13156 for 588 contacts (22.4/contact) +
2D Compatibility (PS) -8992 + (NN) 193 + (LL) 5496
1D Compatibility (HY) -400 + (ID) 1150
Total energy: 8303.0 ( 14.12 by residue)
QMean score : 0.373
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