Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQLFFRYGSMNSGKTIEILKVAHNYEEQNKTVAIFTSGIDDRDQVGFISSRIGLKREATPIFSDTNIFEIVVNIKPKPNCVLLDESQFLEKEHVFQLAKIVDELNIPVIAYGLKNDFRNELFEGSKYLLLYADKLEEMKTICWFCAKKATMVLRVDDKGKPVYTGEQIMIGGNDHYYPVCRKCHANPPIK
2J9R Chain:A ((35-210))
--------GSMFSGKSEELIRRVRRTQFAKQHAIVFKPC-----------------VKAVPVSASKDIFK---HITEEMDVIAIDEVQFFDGD-IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCSACGSPASRTQRLIDGEPAAFDDPIILVGASESYEPRCRHCHAVP---
General information:
TITO was launched using:
RESULT:
Template:
2J9R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64783 for 1173 contacts (-55.2/contact) +
2D Compatibility (PS) -17565 + (NN) -10264 + (LL) 2732
1D Compatibility (HY) -8800 + (ID) 2100
Total energy: -100780.0 ( -85.92 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_2J9R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J9R-query.scw
PDB file :
Tito_Scwrl_2J9R.pdb
: