Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTANQMERKKVTIHITNVIRQMDAEEKSDMSVSGVFYRDKGNRYLHYEEKQLAGTIRTVLKIADNELLLM-RSGAVNMRMHFFRDNRRSTASVDSGAGKLQLESELVSMEELYENKPDVLSEVAFQYDLLSHGEYIGSYTVLMKIEEDAE |
4V3G Chain:A ((249-307)) | ----------------------------------------------------AGTLYTRVRVGKNETKNTDRSGGGNAGINYFKDIRKATVGYEQSIG----ESWVAKAEYEYAN----------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4V3G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 6620 for 266 contacts (24.9/contact) +
2D Compatibility (PS) -5898 + (NN) 2095 + (LL) 7404
1D Compatibility (HY) 400 + (ID) 1000
Total energy: 9621.0 ( 36.17 by residue)
QMean score : -0.272
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