Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKQVALYIAVSLDGYIADENGSVEWLESIDSEG--DAGYEAFFDNVDTVVMGRTTYQQIFSLTDTFPYSKKDVYVFSNTKAGTKDEYAD---FVAGTVDTWLNNIDGE---KIWLVGGAKLVQQFLKERAIDRFVITIAPIILGKGIPLFEEDQEHALELEEVTRFGQFAQLTYKNLEEN
3KY8 Chain:A ((24-168))
-------VFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERVDGLVMGRNTLDMVLSFDCDWPYSKP-VFVLSNTMTEVPQGYEDKVFLVKGKLVDIIADLNAKGFNELYIDGGVT-IQNFLKEDLIDEMVITRFPILLGGGVPLFGE----------------------------
General information:
TITO was launched using:
RESULT:
Template:
3KY8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92539 for 894 contacts (-103.5/contact) +
2D Compatibility (PS) -14714 + (NN) -5298 + (LL) 3332
1D Compatibility (HY) -18800 + (ID) 2950
Total energy: -130969.0 ( -146.50 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_3KY8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KY8-query.scw
PDB file :
Tito_Scwrl_3KY8.pdb
: