Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITIKIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGKGIRYEGEHVRRKEGKTGK
1C04 Chain:B ((7-170))
-------PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVRL-------
General information:
TITO was launched using:
RESULT:
Template:
1C04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53943 for 1196 contacts (-45.1/contact) +
2D Compatibility (PS) -18442 + (NN) -11083 + (LL) 444
1D Compatibility (HY) -16400 + (ID) 5900
Total energy: -105324.0 ( -88.06 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_1C04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C04-query.scw
PDB file :
Tito_Scwrl_1C04.pdb
: