Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVMTDPIADFLTRIRNANMVKHDKLELPASKIKKEIAEILKREGFIRDVEYIEDDNAGTIRVFLKYGATGERVITGLKRISKPGLRVYAKSTEVPKVLNGLGIAIVSTSQGVLTDKEARAKQVGGEVLAYVW
1SEI Chain:A ((1-129))
-VMTDPIADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGPN-ERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGGEIIAYV-
General information:
TITO was launched using:
RESULT:
Template:
1SEI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72846 for 939 contacts (-77.6/contact) +
2D Compatibility (PS) -13844 + (NN) -3516 + (LL) 192
1D Compatibility (HY) -17200 + (ID) 5200
Total energy: -112414.0 ( -119.72 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_1SEI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SEI-query.scw
PDB file :
Tito_Scwrl_1SEI.pdb
: