Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVQFLKKGMVWVQSDIEKQEDLFQMVAESGKSEGYVTDDFLTRLTDREQTFPTGLKLDGYGVALPHTDPECVTEQFIAVITVKDGIPFKLMEDAG---QTVEANLIFVLGLNEPHSQLAVLQQLMGTIQDKDNVAALLRAKDEDEVKQILETIAV
3LF6 Chain:A ((27-157))
-------------------SQNDIIKALASPLINDGMVVSDFADHVITREQNFPTGLPVEPVGVAIPHTDSKYVRQNAISVGILAEPVNF---EDAGGEPDPVPVRVVFMLALGNWFDITNVLWWIMDVIQDEDFMQQLLVMND-DEIYQSIYT---
General information:
TITO was launched using:
RESULT:
Template:
3LF6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76509 for 954 contacts (-80.2/contact) +
2D Compatibility (PS) -14107 + (NN) -7403 + (LL) 3048
1D Compatibility (HY) -12400 + (ID) 2400
Total energy: -109771.0 ( -115.06 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_3LF6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LF6-query.scw
PDB file :
Tito_Scwrl_3LF6.pdb
: