Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAIFITLEGPDGSGKTTVGTLLNQKMTEAGIDFIKTREPGGSPISEKVRNIVLGIGNEEMDPKTEVLLIAGARRQHVVETIRPALAAGKSVLCDRFMDSSLAYQGAGRDMNMEQVLQVNLYAIEDTLPDRTYYLDVPAEVGLARIAANKGREVNRLDKEDITYHEKVQAGYEKVINMFPERFMRVDATKTPEEITETILADILRQLA
4GFD Chain:A ((4-202))
----FITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGEEIRKIVLE-G---MDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERII----------DQEDLKFHEKVIEGYQEIIH---QRFKSVNADQPLENVVEDTYQTIIKYL-
General information:
TITO was launched using:
RESULT:
Template:
4GFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61706 for 1491 contacts (-41.4/contact) +
2D Compatibility (PS) -20078 + (NN) -8058 + (LL) 1988
1D Compatibility (HY) -18400 + (ID) 4600
Total energy: -110854.0 ( -74.35 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_4GFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GFD-query.scw
PDB file :
Tito_Scwrl_4GFD.pdb
: