Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERAFFMQQALEEAEKARDIGEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPCPMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSEMLKSFFQELRKRNKSNRS
2NX8 Chain:A ((15-165))
-EQTYFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERKK----
General information:
TITO was launched using:
RESULT:
Template:
2NX8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73546 for 1321 contacts (-55.7/contact) +
2D Compatibility (PS) -16622 + (NN) -10176 + (LL) 172
1D Compatibility (HY) -14800 + (ID) 3750
Total energy: -118722.0 ( -89.87 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_2NX8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NX8-query.scw
PDB file :
Tito_Scwrl_2NX8.pdb
: