Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIAAFDIGGTALKMGVVLPHGEIILTKSAEISGSDGDQILAEMKVFLAENTDVTGIAVSAPGYVNPKTGLITMGGAIRRFDNFNLKEWLEAETG--LPVAIENDANCALLAEKWLGKGQDLDDFLCLTIGTGIGGGIFSNGELVRGGRFRAGEFGYMFSERPGAFRPGKYTLNETTTMLVLRRQYAELTGRPLEEITGEEIFANYDAHDAVSERLITEFYTGICTGLYNLIYLFDPTHIFIGGGITSRPTFIAELKHHMESFG------LRDTIIETATHKNQAGLLGAVYHFLQEENRHE |
| 2GUP Chain:A ((6-291)) | --IATIDIGGTGIKFASLTPDGKI-LDKTSISTPENLEDLLAWLDQRLSEQ-DYSGIAMSVPGAVNQETGVIDGFSAVPYIHGFS---WYEALSSYQLPVHLENDANCVGLSE--LLAHPELENAACVVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTLAPAEKLNNWSQLASTGNMV---RYVIEKSGH--TDWDGRKIYQEAAAGNILCQEAIERMNRNLAQGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQ-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GUP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176751 for 2324 contacts (-76.1/contact) +
2D Compatibility (PS) -29543 + (NN) -15491 + (LL) 1744
1D Compatibility (HY) -20000 + (ID) 5200
Total energy: -245241.0 ( -105.53 by residue)
QMean score : 0.511
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