Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTALKGVVFDLDGVITDTAHYHYLAWKKTAESIGIEFDEAFNENLKGVSRIDSLLLILRKDGRENDFTEEQIEALAADKNDFYVSLLKEITPADVLPGIKELIVDLKKQNLKCAIASVSKNARTVLSALEMEQEFDYIVDAAKITKSKPDPEIFVEACRGLGLETSEVVGIEDAQAGIEAINAAGIVSVGVGS--GLRDADMTVKSTGLLDLRILEILHSK
4GIB Chain:A ((26-238))
----IEAFIFDLDGVITDTAYYHYMAWRKLAHKVGIDIDTKFNESLKGISRMESLDRILEFGNKKYSFSEEEKVRMAEEKNNYYVSLIDEITSNDILPGIESLLIDVKSNNIKIGLSSASKNAINVLNHLGISDKFDFIADAGKCKNNKPHPEIFLMSAKGLNVNPQNCIGIEDASAGIDAINSANMFSVGVGNYENLKKANLVVDSTNQLKFEYIQ-----
General information:
TITO was launched using:
RESULT:
Template:
4GIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124727 for 1809 contacts (-68.9/contact) +
2D Compatibility (PS) -22795 + (NN) -12076 + (LL) 916
1D Compatibility (HY) -24400 + (ID) 5050
Total energy: -188132.0 ( -104.00 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_4GIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GIB-query.scw
PDB file :
Tito_Scwrl_4GIB.pdb
: