Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKYRIKKNDDFQKVFRRGKSFANRQFVVYTLKQEGSNHFRIGLSVSKKIGNAVCRNRIKRYIRQSFHELESQINPENEYIIIARKPAANMDFHEVKKSLIHVLKVGRVLKQKPNNSK
4JG4 Chain:A ((4-108))
LKKRNRLKKNEDFQKVFKHGTSVANRQFVLYTLDQAENDELRVGLSVSKKIGNAVMRNRIKRLIRQAFLE-EKERLKEKDYIIIARKAASQLTYEETKKSLQHLWR-------------
General information:
TITO was launched using:
RESULT:
Template:
4JG4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41036 for 730 contacts (-56.2/contact) +
2D Compatibility (PS) -11057 + (NN) -3801 + (LL) 648
1D Compatibility (HY) -10800 + (ID) 3200
Total energy: -69246.0 ( -94.86 by residue)
QMean score : 0.684
(partial model without unconserved sides chains):
PDB file :
Tito_4JG4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JG4-query.scw
PDB file :
Tito_Scwrl_4JG4.pdb
: