Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MELIFRIFEMKKTLYITNKLFFANWFVPVIGAVLIQVIGIIVSRRLV--VKLLPDDYKFNLYIALLLFVPILASILLFLIYFQKRDFTSLGFTKDNNVLTTISGFITGSLLMFFIYICHWLSGFVEISSSNSFSFGPFFFLFLAYFIQSLTEEILFRGYVMTTVTKFKGSFAGVLCNSMLFSFIHFRNYGITAIALFNLFLLGIIFSILFNMTKNILFVTGVHTTWNFTMGCVLGNKVSGGYSPVSLFRITENSSFALWNGGDFGFEGGVLCSLILVGCLAYFSLESVRVSVRY |
1KF6 Chain:D ((28-105)) | -------------------------IAPVMILLVGILLPLGLFPGDALSYERVLAFA-QSFIGRVFLFLMIVLPLWCGLHRMH-HAMHDLKIHVPA-GKWVFYGLAAILTVVTLIGVVTI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KF6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48470 for 381 contacts (-127.2/contact) +
2D Compatibility (PS) -7546 + (NN) -116 + (LL) 15232
1D Compatibility (HY) -6000 + (ID) 400
Total energy: -47300.0 ( -124.15 by residue)
QMean score : 0.248
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