Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVPKRVKHRREFRGKMRGEAKGGKEVSFGEYGLQATTSHWITNRQIEAARIAMTRYMKRGGKVWIKIFPHKSYTAKAIGVRMGSGKGAPEGWVAPVKRGKVMFEIAGVSEEVAREALRLASHKLPVKCKFVKREAE
1NJM Chain:K ((8-131))
------TKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTK-------
General information:
TITO was launched using:
RESULT:
Template:
1NJM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 667645 for 5995 contacts (111.4/contact) +
2D Compatibility (PS) -11593 + (NN) -873 + (LL) 1356
1D Compatibility (HY) 1600 + (ID) 600
Total energy: 657535.0 ( 109.68 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_1NJM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NJM-query.scw
PDB file :
Tito_Scwrl_1NJM.pdb
: