Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRIGNKVITLPAGVEIINKDNVVTVKGPKGELTREFNKNIGITVEGTEVTVTRPNDSKEMKTIHGTTRANLNNMVVGVSEGFKKALEMRGVGYRAQLQGSKLVLSVGKSHQDEVEAPEGVTFEVPTPTTINVIGINKESVGQTAAYVRSLRSPEPYKGKGIRYVGEFVRRKEGKTGK
1C04 Chain:B ((7-170))
-------PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVRL-------
General information:
TITO was launched using:
RESULT:
Template:
1C04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53050 for 1196 contacts (-44.4/contact) +
2D Compatibility (PS) -17924 + (NN) -7666 + (LL) 300
1D Compatibility (HY) -12400 + (ID) 4900
Total energy: -95640.0 ( -79.97 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1C04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C04-query.scw
PDB file :
Tito_Scwrl_1C04.pdb
: