Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVFNKLFKRRHSVSEEIKKDDLQEEVEATETEETVEEVIEEIPEKSE-----LELANERADEFENKYLRAHAEMQNIQRRSSEERQQLQRYRSQDLAKAILPSLDNLERALA-VEGLTDDVKKGLEMTRDSLIQALKEEGVEEV--EVDSFDHNFHMAVQTLPADDEHPADSIAEVFQKGYKLHERLLRPAMVVVYN
3A6M Chain:A ((7-166))
--------------------------------ENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEASPESIRQGVRAIRDGFFRILAGLGVEEVPGEGEAFDPRYHEAVGLLPGE----PGKVAKVFQRGFRMGEALVRPARVAVGE
General information:
TITO was launched using:
RESULT:
Template:
3A6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12444 for 797 contacts (-15.6/contact) +
2D Compatibility (PS) -16079 + (NN) -2079 + (LL) 2884
1D Compatibility (HY) -8800 + (ID) 2800
Total energy: -39318.0 ( -49.33 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_3A6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3A6M-query.scw
PDB file :
Tito_Scwrl_3A6M.pdb
: