Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKEKTSQLVQLAIVTAISIVLGMFISIPTPTGFLTLLDAGIFFAAFYFGKKEGAVVGALAGFLIDLLKGYPNWMFFSLLIHGAQGYLAGLPGRRRLLGLISATLVMVLGYAIASGLMYGWGAVLPDIPGNIMQNMVGMVVGFALNKSLERVKK
4QS9 Chain:A ((145-196))
--------------------------------------------------------------------------------------------GRQRELGFTFA--FPVKQTSLSSGSLIKW------TKGFSIEEAVGQDVVGALNKALERVGL
General information:
TITO was launched using:
RESULT:
Template:
4QS9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30410 for 244 contacts (-124.6/contact) +
2D Compatibility (PS) -5002 + (NN) 1899 + (LL) 7588
1D Compatibility (HY) -800 + (ID) 1100
Total energy: -27825.0 ( -114.04 by residue)
QMean score : 0.104
(partial model without unconserved sides chains):
PDB file :
Tito_4QS9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QS9-query.scw
PDB file :
Tito_Scwrl_4QS9.pdb
: