Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKEAILNFLQAKGEPTWLQELRLKAFEKIEELELPVIERVKFHRWNLGDGTILENDYTANIPDFTELGNNPKLVQIGTQTVLEQVPMELIEKGVVFTDFYSALEEIPEVIERYFGKARPFEEDRLAAYHTAYFNSGAVLYIPDNVEITQPIEGLFYQDNQSKVPFNKHILLIVGKNAKVSYLERFESIGDGTERTSANISVEVIAQAGSQ-IKFASIDRLGENVTTFISRRGRHSSDATIDWALGVMNEGNVVADFDSDLIGDGSHANLKVVAASSGRQVQGIDTRV---TNYG-CNSVGHILQHGVILERGTLTFNGIGHIIKGAKGADAQQESRVLMLSDKARSDANPILLIDENDVTAGHAASIGQVDPEDLYYLMSRGLNQKTAEQLVIRGFLGTVIAEIPVKEVRDEMIAVIDTKLEKR |
| 1VH4 Chain:A ((155-418)) | -------------------------------------------------------------------------------------------------------------------------------------------------MHITQGVAG----EEVNTAHYRHHLDLAEGAEATV--IEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHH---FAHNDLLLAEDATAFSHSFLL--GGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNS--RQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRLPGG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VH4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -51506 for 2107 contacts (-24.4/contact) +
2D Compatibility (PS) -26979 + (NN) 461 + (LL) 11932
1D Compatibility (HY) -9600 + (ID) 3700
Total energy: -79392.0 ( -37.68 by residue)
QMean score : 0.250
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