Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTLIVNSHPDFSNPYSFTTILQEKFIELYNEHFPNHQ-LSILNLYDCVLPEITKEVLLSIWSKQRKGLELTADEIVQAKISKDLLEQFKSHHRIVFVSPMHNYNVTARAKTYIDNIFIAGETFKYTENGSVGLMTDDYRLLMLESAGSIYSKGQ-YSPYEFPVHYLKAIFKDFMAFDDFCVVRAEGTDILDRQVVLDKMNQDLREAFEAFYSKE
4M0C Chain:A ((7-215))
--TLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVL-SAWEKQGNGQELTREEQKVTERMSEILQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTDVEYSHKYLKAMF-NFLGIEDYQIVRAQGTAVLDPTEVLQNAYKEVEEAASRLAN--
General information:
TITO was launched using:
RESULT:
Template:
4M0C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134692 for 1581 contacts (-85.2/contact) +
2D Compatibility (PS) -22802 + (NN) -13730 + (LL) 536
1D Compatibility (HY) -19600 + (ID) 4350
Total energy: -194638.0 ( -123.11 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_4M0C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M0C-query.scw
PDB file :
Tito_Scwrl_4M0C.pdb
: