Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFHTKSLIQMAMMATLLVVLGFIPALPLGFIPVPIVLQNLGVMMAGVILGGRKGSLSILLFFLVGLVIPVFSGLRSTIPVLTGPTAGYVIAWLFVPLLISYGVKLVNKKNFIAIFLIVWLAGVLFVDVAGAVWLASYTNIPLDKSLLQNLVF----IPGDTIKAIIAAVVAVKYKDSFFLTEK
1G8M Chain:A ((393-431))
------------------------------------------------------------------------------------------------------------------------------------------NAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYA
General information:
TITO was launched using:
RESULT:
Template:
1G8M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17999 for 144 contacts (-125.0/contact) +
2D Compatibility (PS) -3597 + (NN) -534 + (LL) 12496
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -13934.0 ( -96.76 by residue)
QMean score : 0.666
(partial model without unconserved sides chains):
PDB file :
Tito_1G8M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G8M-query.scw
PDB file :
Tito_Scwrl_1G8M.pdb
: