Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKRIKPNKKRELLKAKGINWKDVRLSQTLQEVASPKKKAPEAPKAVDLLEGLTANKQDVLKEAGLVSLEAFAKVSEADVLALKGIGPAAIKQLVDNGVVFAK
3LDA Chain:A ((88-134))
-------------------------------------------------VNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLN-------
General information:
TITO was launched using:
RESULT:
Template:
3LDA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23967 for 275 contacts (-87.2/contact) +
2D Compatibility (PS) -5162 + (NN) -1135 + (LL) 4072
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -29392.0 ( -106.88 by residue)
QMean score : 0.781
(partial model without unconserved sides chains):
PDB file :
Tito_3LDA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LDA-query.scw
PDB file :
Tito_Scwrl_3LDA.pdb
: